cindy pragma grid

Slide1: 

Cindy Zheng Peter Arzberger Philip Papadopoulos Mason Katz Pacific Rim Application and Grid Middleware Assembly University of California, San Diego http://www.pragma-grid.net http://goc.pragma-grid.net PRAGMA: A Framework For Collaborations

Overview: 

Overview PRAGMA Goal and approach Collaborations In testbed Applications and middleware With technology teams security, data, sensor network, Rocks, Optputer With science teams GEON, GLEON, bioscience With other Grids GIN-OPS, Peer grids In education and training PRIME, PRIUS, NBCR institute Looking forward for more collaborations

PRAGMA: 

http://www.pragma-grid.net Overarching Goals PRAGMA “A Practical Collaborative Framework”. Strengthen Existing and Establish New Collaborations Work with Science Teams to Advance Grid Technologies and Improve the Underlying Infrastructure In the Pacific Rim and Globally

Overview and ApproachProcess to Promote Routine Use Team Science: 

Overview and Approach Process to Promote Routine Use Team Science Application-Driven Collaborations Applications Middleware Outcomes Improved middleware Broader Use New Collaborations Transfer Tech. Standards Publications New Knowledge Data Access Education

Slide5: 

PRAGMA Grid Testbed 29 Clusters from 26 institutions in 14 countries/regions (+9 in preparation) UZurich Switzerland KU NECTEC Thailand UoHyd India MIMOS USM Malaysia CUHK HongKong ASGC NCHC Taiwan IOIT-HCM Vietnam AIST OsakaU UTsukuba TITech Japan BII IHPC NGO Singapore MU Australia APAC QUT Australia KISTI Korea JLU China SDSC USA CICESE Mexico UNAM Mexico UCN Chile UChile Chile UMC USA UUtah USA NCSA USA BU USA ASURC Costa Rica BESTGrid New Zealand CNIC GUCAS China

Applications http://goc.pragma-grid.net: 

Applications http://goc.pragma-grid.net Achieved long run and scientific results Savannah/Nimrod, MU, Australia TDDFT/Ninf-G, FMO/Ninf-G, AIST, Japan Successful run MM5/Mpich-Gx, CICESE/KISTI, Mexico/Korea 12 applications continue run in testbed, various middleware and scientific domains Savannah/Nimrod: climate model, MU, Australia MM5/Mpich-Gx: climate model, CICESE, Mexico QM-MD, FMO/Ninf-G: quantum-mechanics, AIST, Japan iGAP/Gfarm/CSF: genomics, UCSD, USA HPM: genomics, IOIT-HCM, Vietnam mpiBlast/Mpich-G2: genomics, ASGC, Taiwan Gamess-APBS/Nimrod: organic chemistry, UZurich, Switzerland Siesta/Nimrod: molecular simulation, UZurich, Switzerland Amber/Rsh: molecular simulation, USM, Malaysia

Application/Middleware Collaborationshttp://wiki.pragma-grid.net http://goc.pragma-grid.net: 

Mutually beneficial Nimrod based Gamess-APBS Gamess-APBS: UZurich, Switzerland Nimrod: MU, Australia Mpich-Gx based MM5 and WRF MM5 and WRF: CICESE, Mexico Mpich-Gx: KISTI, Korea Test/develop Gfarm and CSF with iGAP Gfarm: AIST, Japan CSF: JLU, China iGAP: UCSD, USA Application/Middleware Collaborations http://wiki.pragma-grid.net http://goc.pragma-grid.net

Collaborations With Technology Teams: 

Grid security IGTF accredition APGrid PMA, http://www.apgridpma.org/ AIST, ASGC, CNIC, NCSA, … PRAGMA CA, catch-all GSI credential management Naregi-CA (Naregi, Japan) GAMA (SDSC, USA) Computation + data + sensor Gfarm-fuse (TsukubaU/AIST, Japan) Grid monitoring and accounting (ThaiGrid, NTU Singapore) GEON data network GLEON sensor network Rocks and middleware Ninf-G, SCE, Gfarm, Bio, K*Rocks, Condor, … AIST, ThaiGrid, NBCR, KISTI, UWSC, … Rocks (SDSC, USA) OptIPuter High performance networked TDW (CalIT2/UCSD, KISTI, AIST, OsakaU, NCHC, CNIC, …) Collaborations With Technology Teams

Slide9: 

Controlling @ CNIC Viewing @ UCSD TDW/OptIPuter Example Source: Elaine Liu, PRIME 2006

Collaborations in BioScience: 

Collaborations in BioScience Avian Flu Research Project UCSD, CNIC, JLU, Uni. Of Tskuba/AIST, University of Hawaii and Konkuk University EGEE – Academia Sinica Biosciences Portal Collaboration between Osaka University, University of Queensland, JLU, UCSD. Involves PRIME, PRIUS and summer students from UCSD, Osaka and JLU. Metagenomics Research and Genome Informatics Bioinformatics, computational biology software Gfarm/CSF4, TskubaU/JLU, Japan/China With University of Wisconsin, UCSD, PRIME project

GEON-iGEON-PRAGMA: 

GEON-iGEON-PRAGMA GEON is a coalition among IT and Earth Science researchers with the goal of developing advanced information technologies to enable new modes of geosciences research GEON is developing technologies for information integration and knowledge discovery www.geongrid.org Internationalization of GEON – iGEON PRAGMA Some sites already working on geoscience projects Building a datagrid Welcome geoscience applications Seeking collaboration in grid interoperation

PRAGMA and GEON/iGEON collaboration: 

PRAGMA and GEON/iGEON collaboration Sharing data, software know-how, interoperate grids Geoscience workgroup established at PRAGMA11 GUCAS (China) Setup a GEON node in PRAGMA testbed UMC (USA) and GUCAS Preparing a GEON application to run in PRAGMA testbed CNIC (China) Is setting up a GEON data node in PRAGMA testbed UoHyd (India) has setup a GEON node, will join PRAGMA testbed AIST Geogrid (Japan) plan Share data with GEON Interoperate with PRAGMA testbed

Collaboration in Environmental Science: 

Collaboration in Environmental Science GLEON A grassroots network of People: lake scientists, engineers, information technology experts Institutions: universities, national laboratories, agencies Programs: PRAGMA, AS-Forest Biogeochemistry,US-LTER, TERN, KING, EcoGrid, etc. Instruments Data Linked by a common purpose and cyberinfrastructure With a goal of understanding lake dynamics at local, regional, continental, and global scales

New Paradigm: Global Team Science: 

New Paradigm: Global Team Science U.Waikato D.Hamilton Models NCHC F.P.Lin Maintain YYL Parallelize Codes U.Wisconsin T.Kratz Maintain Trout Bog Lake Metabolism UCSD F.Vernon, S.Peltier, T.Fountain P.Arzberger ROADNet, Telescience Moore Fnd, PRAGMA NIGLAS B.Q Qin Maintain Taihu Physical Limnology Kangwon U B.Kim Maintain Soyang Public Policy

Slide15: 

BU (USA) Joining PRAGMA grid testbed Preparing a sensor network application to run in the testbed NCHC (Taiwan) preparing a sensor application to run in testbed PRAGMA Grid + GLEON sensor network link GLEON sites to PRAGMA testbed computing and data grids Collaboration with GLEON Lake Taihu Nanjing Institute of Geography and Limnology, Chinese Academy of Science

Grid Interoperation Now (GIN)http://forge.gridforum.org/sf/wiki/do/viewPage/projects.gin/wiki/GinOps: 

GIN – a project under OGF GIN testbed (started Feb. 2006) PRAGMA, TeraGrid, EGEE, OSG, NorduGrid Applications TDDFT/Ninf-G Yoshio Tanaka, Yusuke Tanimura (AIST, Japan) Deployed and run PRAGMA - AIST, NCSA, SDSC TeraGrid – ANL OSG – UCSD NorduGrid Working on deployment to EGEE Savanah fire simulation (data intensive) Colin Enticott (MU, Australia) Started in GIN testbed Grid Interoperation Now (GIN) http://forge.gridforum.org/sf/wiki/do/viewPage/projects.gin/wiki/GinOps

GIN Testbed Monitoringhttp://forge.gridforum.org/sf/wiki/do/viewPage/projects.gin/wiki/GinOps: 

GIN Testbed Monitoring http://forge.gridforum.org/sf/wiki/do/viewPage/projects.gin/wiki/GinOps Infrastructure testing matrix http://goc.pragma-grid.net/cgi-bin/scmsweb/probe.cgi SCMSWeb (by Thaigrid) Working with PRAGMA Grid, TeraGrid, OSG, NorduGrid, EGEE New version to handle various grid service configurations/tests GIN map http://maps.google.com/maps?q=http://lfield.home.cern.ch/lfield/gin.kml Implemented a XML-> LDIF translator for GIN map Collaboration of ThaiGrid and CERN Cross-grid monitoring - Common schema http://wiki.pragma-grid.net/index.php?title=GIN_%28Grid_Inter-operation_Now%29_Monitoring Working with PRAGMA Grid, TeraGrid, OSG, NorduGrid, EGEE

Peer Grids Interoperations: 

Peer Grids Interoperations PRAGMA application developers running applications across grids QM/MD by AIST, run on PRAGMA Grid and TeraGrid Talking with OSG, LSU, UCGrid Running applications across grids Bi-directional Develop a minimum set of tools to enable interoperation

PRIME http://prime.ucsd.edu: 

PRIME http://prime.ucsd.edu Providing UCSD undergraduate students international interdisciplinary research internships and Cultural experiences Preparing the global work place of the 21st century Built on top of PRAGMA R&D network and activities for Undergraduate Research A Pilot Project for Global Engagement PRIME Class 2006 Summer research abroad Mentors from UCSD and host institutions Real science and practical projects Learning science, technology and culture Demo’s and talks Continuing research involvement thereafter

PRIME 2006 (Thrid Year)Host Institutions and Projects at a Glance: 

PRIME 2006 (Thrid Year) Host Institutions and Projects at a Glance CNIC, China Virtual Screening of Avian Influenza H5N1 Neuraminidase and Hemagglutinin proteins against two libraries of ligands High-resolution astronomial visualization and visual collaboration environment MU, Australia Computational analysis of biological structures using GAMESS-APBS/Nimrod programs Develop efficient method for large scale virtual screening of ligands More stable ionic model of ventricular myocytes OsakaU, Japan Homology modeling of the protein kinases and binding site prediction Docking simulations of protein kinases and virtual screening of ligands for inhibitors Established networked Tile Display Wall NCHC, Taiwan implementing image-processing software for neural networks Develop software tools for earthquake experiments, monitoring and analysis Prime Students 2006 Hosted by CNIC, China At Lao She Tea House

PRIUS - Pacific Rim International UniverSity Based at Osaka University: 

PRIUS - Pacific Rim International UniverSity Based at Osaka University Establish a consistent educational program for graduate students. On-the-Job-training and education with PRAGMA Lecture course: Stimulate students’ ambitious Short Abroad Internship: Offer trial opportunities Long Abroad Internship: Provide skill building chances M1 M2 Doc P.D Exchange prgm: produces liquidity in human resource P.D Educational Part Research Part Source: Susumu Date, Osaka University http://prius.ics.es.osaka-u.ac.jp/en/index.html

PRIUS (First Year): 

PRIUS (First Year) 10 International instructors All from PRAGMA members UCSD, USA NCHC, Taiwan NTU, Singapore QUT, MU, Australia Grid computing/applications Grid and web services Clustering tools Optical network computing Grid accounting systems Biomedical grid applications Economic and social impact of cyberinfrastructure Interaction with students Internship abroad UCSD, USA Develop QM/MM hybrid simulation program for protein research using OPAL NTU, Singapore Design/prototype a grid security monitoring system as an add-on to MOGAS QUT, Australia Develop a bioscience portal for PRAGMA NCHC, Taiwan Implement high-definition-quality streaming video over a high-speed network with various TDW technologies

More Collaborations Forward: 

More Collaborations Forward Testing Gfarm with applications More peer grids interoperation experiments More collaborations with science teams GEON, GLEON, CAMERA, … More collaboration with technology groups Meta-schedulling, portal, … Greater use of the network Using optical networks and tile display walls Cyber-environment More exchange of students, replicate PRIME, PRIUS More trainings Globally, especially with technology and science teams in China

Future Meeting: 

Future Meeting 20 – 22 March 2007, Bangkok Thailand PRAGMA 12 Hosted by NECTEC and Thai National Grid Center 18 – 20 March 2007: GEOGrid Workshop Fall 2007, Urbana-Champaign USA PRAGMA 13 Hosted by NCSA Spring 2008, Hsinchu Taiwan PRAGMA 14 Hosted by NCHC Fall 2008, Penang Malaysia PRAGMA 15 Hosted by USM

Slide25: 

http://www.pragma-grid.net http://goc.pragma-grid.net Thank You PRAGMA is supported by the National Science Foundation (Grant No. INT-0216895, INT-0314015, OCI -0627026), and member institutions PRIME is supported by the National Science Foundation under NSF INT 04007508