MNE Tools & Scripts: MNE Tools andamp; Scripts Karim Kassam


Slide2: meg_average mne_simu meg_stc_morph ROI analysis in Excel custom MNE movies


Slide3:


Slide4: Real Data Simulated Data


Slide5: Subject 1 Subject 2 Subject 3


Slide6:


meg_average: meg_average


VBA in Excel: VBA in Excel


Slide9: Real Data Simulated Data


mne_simu: mne_simu Simulate a source


mne_simu: mne_simu


mne_simu: mne_simu +


mne_simu: mne_simu


mne_simu: mne_simu


Slide15: Subject 1 Subject 2 Subject 3


meg_stc_morph: how bad is it? spatial problems statistical problems meg_stc_morph now infamous intersubject averager there are some problems it’s not that bad, at least qualitatively


Slide17: Real Data Simulated Data


Spatial problems: Spatial problems mne_make_uniform_stc


Spatial Problems: Spatial Problems


Spatial Problems: Spatial Problems


Spatial Problems: Spatial Problems


Spatial Problems: Spatial Problems


Spatial Problems: Spatial Problems


Spatial Problems: Spatial Problems


ROI analysis: ROI analysis avoid spatial problems


ROI analysis: ROI analysis avoid spatial problems


ROI analysis: ROI analysis avoid statistical problems ttest


ROI analysis: ROI analysis avoid statistical problems Arithmetic Average subtract condition in xplotter (task - control) noise normalize convert f-statistics to p-stats


ROI analysis: ROI analysis avoid statistical problems T Test calculate currents for main effects (task and control) generate ROI, perform ttest (ttest averaged over 50 ms)


ROI analysis: ROI analysis avoid statistical problems Arithmetic Average T Test


Slide31: Subject 1 Subject 2 Subject 3


MNE Movies: MNE Movies EasyMEG does a great job of rendering movies But sometimes for talks we may want to show more Can use a combination of programs to make custom movies


MNE Movies: MNE Movies meg_snapshot_om  make pictures for every frame and every view photoshop adjust contrast and put frames together matlab (showtime toolbox) control timing and make movie


MNE Movies: MNE Movies meg_snapshot_om  make pictures for viewname in 'lat med ven' do meg_snapshot_om \ --frameopt '0 10 10 20 20 30 30 40 40 50 50 60 60 70 ...' done


MNE Movies: MNE Movies photoshop  adjust contrast


MNE Movies: MNE Movies photoshop  create frame


MNE Movies: MNE Movies matlab  create movie


MNE Movies: MNE Movies matlab  create movie


where to go for more info: where to go for more info Visual Basic in Excel http://www.engineering.usu.edu/cee/faculty/gurro/VBAandamp;Excel.htm mne_simu (type in command line for instructions) mne_make_uniform_stc (type in command line for instructions)


where to go for more info: where to go for more info Movies: meg_snapshot_om (will post) AppleScript for Photoshop (will post) showtime.mex for Matlab (quicktime movie maker) www.psychtoolbox.org/download


thank you: thank you Moshe Bar Elissa Aminoff Jasmine Boshyan Mark Fenske Avniel Ghuman Nurit Gronau Irina Ostrovskaya Matti Hamalainen Ksenija Marinkovic Eric Halgren Brendan Cox Matt Cain Thomas Witzel Sari Levanen Seppo Ahlfors Steve Stufflebeam Daniel Goldenholz Dan Wehner